rs31168423 SNP Detail

Summary

• ID
  rs31168423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152915632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGGTGG AAATGAACTT
  CAGAGAAGCC AGAACCCCAA ACCTAGAAAG CACTGGGGAG CCACTAGAGT ATCTGCCCTC
  TCTTCTTTCC TCTTGCTCTG TATCTAATTC ACTGTTCTTT CTGCAGAATT GTTTCCTCTG
  CATGAACAGC TCAGAAATGG TCCACAGTAG CCCCTCAGGC CTCCACAAGA GCTGTCTGCA
  Y
  GTTTCCCTTC TCTTGTATGC TGTCTTCTCA TCCAGATATC CAAGGCAGGA TTTCTATCGA
  CTACTATTCT AGTCCCTTCA GCTAAGGGTG GGGAAGGAAA GGGTCAGAGT TCACAAACTG
  GGTGTCAATT TCCTATCACT GTGGGTCCCC AAGCCAGTAC AGAAAAACAC TGTAGACCAA
  GACGATGTTT CTCAAGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45020712	mCV24633910	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss49710629	NES13072524	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	C	C
ss145736571	ENSMUSSNP5979644	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31168423					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49710629	NES13072524	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152915632 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			457 bp distal
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420580	regulatory region 420580			1676 bp distal
Rr420581	regulatory region 420581			76 bp proximal
Rr420582	regulatory region 420582			471 bp proximal
Rr420583	regulatory region 420583			650 bp proximal