rs31169268 SNP Detail

Summary

• ID
  rs31169268
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152914777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cctactcca acaaggccac aactcctaat
  agtgccactc cttatggccc aagtgttcac atacatgagt ctattcaaac caccacTGGG
  AGACCTTAGG CCTTGGATAA TAGTCTCAGC AGAGTCATCT ACATGACAGG CTCTGTAATG
  S
  AGCTGCTAAG GGCTGTTCTT TTTGTTTGTT TGTTTGTttt tgttttttga gactgggttt
  ctctgtgtag ccctggctgt cctggaactc actttgtaga ccaggctggc ctcgaactca
  gaaatccgcc tgcctctgcc tcccaagtgc                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45154264	mCV24633932	ABI	CRAMUS_MOUSE	f	SNP	C	C	G				G		G
ss49710634	NES13072554	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	C	G		G	G	G		G	G	C	G		G
ss145736555	ENSMUSSNP6979741	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						G
ss320070026	CHEV_1_154886156	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31169268					SNP	C	C	G	G	C	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49710634	NES13072554	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152914777 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			187 bp proximal
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420580	regulatory region 420580			821 bp distal
Rr420581	regulatory region 420581			931 bp proximal
Rr420582	regulatory region 420582			1326 bp proximal
Rr420583	regulatory region 420583			1505 bp proximal