rs31171342 SNP Detail

Summary

• ID
  rs31171342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:50745847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAC TGGGACACAC AGAAGGGAGC
  R
  AGGAATCTAC CCCGGAGTGC TCTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47524406	NES11455995	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	A	A	G	A	G	G		G	A	G	A		G
ss144829250	ENSMUSSNP2531558	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss322660213	CHEV_8_51378166	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31171342					SNP	G	G	G	A	A	A	A	G	A	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47524406	NES11455995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:50745847 () rs orientation: forward

Symbol	Name	Function Class
Gm45341	predicted gene 45341	within coordinates
Rr176972	regulatory region 176972	47 bp distal
Rr176973	regulatory region 176973	554 bp proximal
Rr189942	regulatory region 189942	within coordinates
Rr189943	regulatory region 189943	554 bp proximal