rs31172489 SNP Detail

Summary

• ID
  rs31172489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152682547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTAAGAAT CAGTGTCAAG GATCTGAGAC
  TTAAAGACAC TGTCCCAAAT TTCAAGGGAC CTAAGAAGTA AGCAGGTTGA GAGGAAATTC
  GGTCATTATT TCGGAGGAGG TGAGACAAAG GGACAATACT CTCTCCGTAA TGTAGAGTGC
  R
  GAGTGGACTG TCGCACAGTA GGGACATAGG AGACTGGATG AATGAGCCTG GAAGGGTGAG
  GAGATTACCA GGCAAAGAAG TGAGATAGGA AGGCCTGCCA AAGTCAGGGT AGAGGCTATG
  CAATAGCACC Ttcctcctcc tcctcctcct                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss49711715	NES13078962	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G	G		G	A
ss320068349	CHEV_1_154653926	CHEVERUD	SCREENING_POP	f	SNP									G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs31172489					SNP	G	G	A	G	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711715	NES13078962	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152682547 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	727 bp proximal
Tssr9423	transcription start site region 9423	976 bp upstream
Tssr9424	transcription start site region 9424	1023 bp upstream
Tssr9425	transcription start site region 9425	1031 bp upstream
Tssr9426	transcription start site region 9426	1081 bp upstream
Tssr9427	transcription start site region 9427	1109 bp upstream
Tssr9428	transcription start site region 9428	1122 bp upstream
Tssr9429	transcription start site region 9429	1152 bp upstream
Tssr14234	transcription start site region 14234	1514 bp downstream