rs31172490 SNP Detail

Summary

• ID
  rs31172490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152682528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT GAGACAAAGG GACAATACTC
  Y
  CTCCGTAATG TAGAGTGCGG AGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49711716	NES13078961	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	C		C	T	C	C
ss320068348	CHEV_1_154653907	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31172490					SNP	T	T	T	C	T	T	T	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711716	NES13078961	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152682528 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	746 bp proximal
Tssr9423	transcription start site region 9423	995 bp upstream
Tssr9424	transcription start site region 9424	1042 bp upstream
Tssr9425	transcription start site region 9425	1050 bp upstream
Tssr9426	transcription start site region 9426	1100 bp upstream
Tssr9427	transcription start site region 9427	1128 bp upstream
Tssr9428	transcription start site region 9428	1141 bp upstream
Tssr9429	transcription start site region 9429	1171 bp upstream
Tssr14234	transcription start site region 14234	1533 bp downstream