rs31173308 SNP Detail

Summary

• ID
  rs31173308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152681606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acaataCCT GCCAGTCCCA CAAGGAGTCT
  GGAAAGAGCT TCACAAATGC GGTATGACCC ATTTGGGGTG GGCTTTAGAA ACAGTCCAAA
  AACTGCAGAG AGAAGAGAAT TAGCCAGGGA TGGCCAGAAG ACTATGTTAA CTGATGGTAT
  Y
  TCAGCCTATA TGGTGACAGG GACTAGAGAA AGTGGACAGA ACTGACTCCA ACTTGATTGC
  TGATACCCTA AGGACAGAGA GTAGGTTGTC CCCACCCTCA ACATCTGCCT GGAGGTTTGA
  GGTCTGTCCT GGGGTAAAGA CACAAGAGCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss49711724	NES13078987	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	C	C		C	T	C
ss320068334	CHEV_1_154652985	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs31173308					SNP	T	T	C	T	C	T	T	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711724	NES13078987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152681606 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	1668 bp proximal
Tssr9423	transcription start site region 9423	1917 bp upstream
Tssr9424	transcription start site region 9424	1964 bp upstream
Tssr9425	transcription start site region 9425	1972 bp upstream