rs31173947 SNP Detail

Summary

• ID
  rs31173947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152666400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAAAACGG GTTTACAGCT GAATTGCCTT
  TGACAAACTG ACCTATTAAG GAAAACAGCA TAGCGTGACT GGGTGCAGTG CTTTGGGAGT
  GGTCTTCTCC GTCTCGCTCG CTTTCACAGA GCGCCAGCTT TGCAAGCTGA CAGGTCCCAG
  Y
  CATATTTAAG GTCACAAACC TTGAACAAGT TACAGACTCC AAGGCTCGTT GGGGAAAGCT
  CTTTGGTTAT CAGCgttgtt gttgttgttg ttgttgttgt tgttgttgtt gttgttgttA
  GAAACAATGA ACTGATGCCC ACAAAGTACA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49711833	NES13061027	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C	C	C	T		T		C	T	T		C
ss145735337	ENSMUSSNP155459	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C					T
ss320068151	CHEV_1_154637779	CHEVERUD	SCREENING_POP	f	SNP											C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31173947					SNP	C	C	T	C	T	C	C	C	C	T	C	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711833	NES13061027	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152666400 () rs orientation: forward

Symbol	Name	Function Class
Rr420541	regulatory region 420541	within coordinates
Rr420542	regulatory region 420542	292 bp distal
Rr420543	regulatory region 420543	168 bp distal
Tssr9422	transcription start site region 9422	1246 bp upstream