rs31173953 SNP Detail

Summary

• ID
  rs31173953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152665285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCATATCC TACTCTCCCC CTcataccca
  ccccataccc accccatacc caTCTGGCAC CCACCCCAGT CGAGTTCCTG ACCTCAGGAG
  CTCCCAACCT TCTCTACTCC AGCTGCAGAG GTCATGCTGA CTCCCAGATG TACAGAGGAA
  R
  CAGCAGCTCT TATACAGCAT CAGTGGAAGA ACTTCAGTCA TTTAGGGCAG GGTCAGAGTT
  TACTGACATC TCTATAAGCC ACATCATCCC CTTCCCTAGC TACAGTATCA TCATTCATGA
  GAGAGCTTCA TGTTGGTGTG TTGTTGTTGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49711839	NES13061073	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	A		A	G	G		A
ss320068142	CHEV_1_154636664	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31173953					SNP	A	A	A	G	A	G	A	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711839	NES13061073	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152665285 () rs orientation: forward

Symbol	Name	Function Class
Rr420541	regulatory region 420541	699 bp proximal
Rr420542	regulatory region 420542	802 bp proximal
Rr420543	regulatory region 420543	926 bp proximal