rs31174584 SNP Detail

Summary

• ID
  rs31174584
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152665204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTAGTTTA TCTAAACTAA ACTGTCAGAA
  GGCTGTGAAT CAAGCAGGAG GTATCTTGGG GATCAGGTAT GTGTTATCAC CCCCCATATC
  CTACTCTCCC CCTcataccc accccatacc caccccatac ccaTCTGGCA CCCACCCCAG
  Y
  CGAGTTCCTG ACCTCAGGAG CTCCCAACCT TCTCTACTCC AGCTGCAGAG GTCATGCTGA
  CTCCCAGATG TACAGAGGAA ACAGCAGCTC TTATACAGCA TCAGTGGAAG AACTTCAGTC
  ATTTAGGGCA GGGTCAGAGT TTACTGACAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49711840	NES13061072	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C	T	T	C		C	T	C	C
ss320068141	CHEV_1_154636583	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31174584					SNP	T	T	C	T	C	T	C	T	T	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711840	NES13061072	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152665204 () rs orientation: forward

Symbol	Name	Function Class
Rr420541	regulatory region 420541	780 bp proximal
Rr420542	regulatory region 420542	883 bp proximal
Rr420543	regulatory region 420543	1007 bp proximal