rs31174585 SNP Detail

Summary

• ID
  rs31174585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152665076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTATTTT ATGTAAGTAC
  ACTGCAGCTG TCTTCAGACA CACCAGAAGA GGGCATCAGA TCTCATTACA GATGGTTGTA
  AGCCACCATG TGGTTGCTTG GATTTGAACT CAGGACCTCT GGAAGAGCAG TCAGTGCTCT
  TACCCTCTGA GCCATCTCTC CAGCCCCTTA AGAAACATTT CTAGTTTATC TAAACTAAAC
  Y
  GTCAGAAGGC TGTGAATCAA GCAGGAGGTA TCTTGGGGAT CAGGTATGTG TTATCACCCC
  CCATATCCTA CTCTCCCCCT CATACCCACC CCATACCCAC CCCATACCCA TCTGGCACCC
  ACCCCAGTCG AGTTCCTGAC CTCAGGAGCT CCCAACCTTC TCTACTCCAG CTGCAGAGGT
  CATGCTGACT CCCAGATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49711841	NES13061071	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31174585					SNP	T	T	T	C	T	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711841	NES13061071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152665076 () rs orientation: forward

Symbol	Name	Function Class
Rr420541	regulatory region 420541	908 bp proximal
Rr420542	regulatory region 420542	1011 bp proximal
Rr420543	regulatory region 420543	1135 bp proximal