rs31174588 SNP Detail

Summary

• ID
  rs31174588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152664429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCAGGAT AATCAGGGGA
  GGGAGGAGGA ACCTAACCCT AATCCCAGCA GCAAGGATAA ACTGTCCCAC TACCTCTGTG
  TCTGCCACAG TGCCCCAGCC CAAACCAAGG AAGAGTTCTG AAACCTTTCA AGTGGCCCTG
  TGGGCCTGGA GAAGGTACCT GGGCTCAGCG ACGGGCCTAA CCAGAGAGCT GGAGTTACAA
  Y
  CCCTGTTTTC TTCGATTAAA ACTGTGTAAG GCAGGGACTG GAGAGATGGC TTAATGTTTA
  AGAGCACTGG CTGCTCTTCC AGAGGATCCT GGTTCAATTC CTAGTGTCTG CACGGCAACT
  CACAACTGTC TGCAACTTCA GTTCCAGGGC TTCTGGCACC CTCACACAGA AATACATGCG
  GGCAAAACAC CAATGCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49711844	NES13061125	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31174588					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711844	NES13061125	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152664429 () rs orientation: forward

Symbol	Name	Function Class
Rr420540	regulatory region 420540	1406 bp distal
Rr420541	regulatory region 420541	1555 bp proximal
Rr420542	regulatory region 420542	1658 bp proximal
Rr420543	regulatory region 420543	1782 bp proximal