rs31174589 SNP Detail

Summary

• ID
  rs31174589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152664418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTTGCA GATTCCAGGA
  TAATCAGGGG AGGGAGGAGG AACCTAACCC TAATCCCAGC AGCAAGGATA AACTGTCCCA
  CTACCTCTGT GTCTGCCACA GTGCCCCAGC CCAAACCAAG GAAGAGTTCT GAAACCTTTC
  AAGTGGCCCT GTGGGCCTGG AGAAGGTACC TGGGCTCAGC GACGGGCCTA ACCAGAGAGC
  Y
  GGAGTTACAA TCCCTGTTTT CTTCGATTAA AACTGTGTAA GGCAGGGACT GGAGAGATGG
  CTTAATGTTT AAGAGCACTG GCTGCTCTTC CAGAGGATCC TGGTTCAATT CCTAGTGTCT
  GCACGGCAAC TCACAACTGT CTGCAACTTC AGTTCCAGGG CTTCTGGCAC CCTCACACAG
  AAATACATGC GGGCAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49711845	NES13061124	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31174589					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711845	NES13061124	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152664418 () rs orientation: forward

Symbol	Name	Function Class
Rr420540	regulatory region 420540	1395 bp distal
Rr420541	regulatory region 420541	1566 bp proximal
Rr420542	regulatory region 420542	1669 bp proximal
Rr420543	regulatory region 420543	1793 bp proximal