rs31174885 SNP Detail

Summary

• ID
  rs31174885
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152625053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAGGCA TATACCACCA
  CACACAACTT TTTATATATT ACTGTATGGT GGAGTATCAC TGTTAGAACT AAGCAGGAGA
  TGAAGTATGA GAATCAACTT TCAGTCATGA GTAAATTCCG TGAGGAGATG TTCCAGACGT
  AACAGCAAAA CCAAGAAGGG CGTGATTCAG GCAAAAGGTA GGTAGGGAAG GATGAGATCC
  R
  ACAGCGAATG TGCCACAGAA AAGCAACTGA ACACCATTAG CTGAGAACGG ACTAGTGCAC
  TAGAGACCCT GGGAAACACA GAGCCCAAGA GAACACAGCC AGCCTCCAGG GAGCCCCGTG
  GCTGGGAGAG GACAGCTGAC AACGGCCACC AGAGTCTGAC AACGGAAGCA CAACAACGGA
  AGTAACACCA AAACCAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49712011	NES13062301	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31174885					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49712011	NES13062301	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152625053 () rs orientation: forward

Symbol	Name	Function Class
Apobec4	apolipoprotein B mRNA editing enzyme catalytic polypeptide-like 4	1249 bp upstream
Gm28792	predicted gene 28792	within coordinates
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	within coordinates
Rr31152	regulatory region 31152	148 bp proximal
Tssr9415	transcription start site region 9415	1221 bp upstream
Tssr9416	transcription start site region 9416	1225 bp upstream
Tssr9417	transcription start site region 9417	1252 bp upstream