rs31174886 SNP Detail

Summary

• ID
  rs31174886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152625014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATCTGCC AGACTTTATT
  CCGTTCCCCA ACTGCTAGGA ATAAAGGCAT ATACCACCAC ACACAACTTT TTATATATTA
  CTGTATGGTG GAGTATCACT GTTAGAACTA AGCAGGAGAT GAAGTATGAG AATCAACTTT
  CAGTCATGAG TAAATTCCGT GAGGAGATGT TCCAGACGTA ACAGCAAAAC CAAGAAGGGC
  R
  TGATTCAGGC AAAAGGTAGG TAGGGAAGGA TGAGATCCAA CAGCGAATGT GCCACAGAAA
  AGCAACTGAA CACCATTAGC TGAGAACGGA CTAGTGCACT AGAGACCCTG GGAAACACAG
  AGCCCAAGAG AACACAGCCA GCCTCCAGGG AGCCCCGTGG CTGGGAGAGG ACAGCTGACA
  ACGGCCACCA GAGTCTGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49712012	NES13062300	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31174886					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49712012	NES13062300	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152625014 () rs orientation: forward

Symbol	Name	Function Class
Apobec4	apolipoprotein B mRNA editing enzyme catalytic polypeptide-like 4	1288 bp upstream
Gm28792	predicted gene 28792	within coordinates
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	within coordinates
Rr31152	regulatory region 31152	187 bp proximal
Tssr9415	transcription start site region 9415	1260 bp upstream
Tssr9416	transcription start site region 9416	1264 bp upstream
Tssr9417	transcription start site region 9417	1291 bp upstream