rs31174890 SNP Detail

Summary

• ID
  rs31174890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152624695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGTGCT GGGATTAAAG
  GTATGCGCCA CCACTGCCCA GCCTGGTTTA ACATTCTTTA GGACATGATT TAGTGAGTAT
  CTAACCCACC ACTGAAGTTG CATGCTACAC ACAGGATGAC CAACAAGTCT GTGGGGCTTG
  TTTCCTCCTT TTCCTGCTTG ACTAGACCTA TGGCATGCCA AGTCCTTTTT TTATTATATA
  R
  TATCTCAAAA GCTTATAAAA CTACCACATT TTTTAGATTT ACTTAAAAAA AAAATAGATA
  AGATCTTACT AGCCCTGGCT AGCCTAGAAC TCAATACAAA GCTCGCCTCA AACTCACAGA
  CATCTGCCAG ACTTTATTCC GTTCCCCAAC TGCTAGGAAT AAAGGCATAT ACCACCACAC
  ACAACTTTTT ATATATTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ
ss49712016	NES13062314	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ
rs31174890					SNP	A	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49712016	NES13062314	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152624695 () rs orientation: forward

Symbol	Name	Function Class
Apobec4	apolipoprotein B mRNA editing enzyme catalytic polypeptide-like 4	1607 bp upstream
Gm28792	predicted gene 28792	within coordinates
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	within coordinates
Rr13092	regulatory region 13092	1895 bp distal
Rr31151	regulatory region 31151	1974 bp distal
Rr31152	regulatory region 31152	506 bp proximal
Tssr9415	transcription start site region 9415	1579 bp upstream
Tssr9416	transcription start site region 9416	1583 bp upstream
Tssr9417	transcription start site region 9417	1610 bp upstream