rs31174892 SNP Detail

Summary

• ID
  rs31174892
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152624360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccaattagc ctaatcatta cacatAAGTA
  TCTTCCATTG TTATGTGata attagaaatt taatatatat tttaaatatC AGTGAGCTTC
  CTAAAACCAC CCAAGTACAC AAGTGGATGT ATTACATGGT GCATGTTTGC TGCTGCTTCT
  D
  GCTTAACATT CTTTTTTTTT TTTTTTTTTt tttagttttt cgagacaggg tttctctgtg
  tagccctggc tgtcctggaa ctcactctgt agaccaggct ggcctcgaac tcagaaatcc
  tcctacctct gcctcccaag tgctgggatt                                 
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49712018	NES13062339	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	T		T	G	T	T		G
ss320067876	CHEV_1_154595739	CHEVERUD	SCREENING_POP	f	SNP								G					A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31174892					SNP	G	G	T	G	T	G	T	G	T	G	T	T	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49712018	NES13062339	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152624360 () rs orientation: forward

Symbol	Name	Function Class
Apobec4	apolipoprotein B mRNA editing enzyme catalytic polypeptide-like 4	1942 bp upstream
Gm28792	predicted gene 28792	within coordinates
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	within coordinates
Rr13092	regulatory region 13092	1560 bp distal
Rr31151	regulatory region 31151	1639 bp distal
Rr31152	regulatory region 31152	841 bp proximal
Tssr9415	transcription start site region 9415	1914 bp upstream
Tssr9416	transcription start site region 9416	1918 bp upstream
Tssr9417	transcription start site region 9417	1945 bp upstream