rs31175081 SNP Detail

Summary

• ID
  rs31175081
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21575724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACTCCCT CTGCAATTGA
  CTTGGTGTTG TCAGGCCTGA GTGTCTCCAT CCTCGCCATC CGAGTCAGAC TCAGCGTCTA
  AGTCCTCATC ACTGTCTTCC TTCCGTCCGC AGCGTCTTCT ATGGCCAGAA CCTTCATTTT
  CAGTGTTTTC TGGAGCGTCT GGTTCTTTAT TAAACCTAAA TGGAAGAAAA GGAAGACAAG
  B
  TGAAAACGAA TTCCCAGGCT TCCTTTATCT AAAAGCGATA AAGCCTTTAC AAGTCTACTA
  TTGGAGTCTC CAGAGAGAAC AGAGCTCTCC TACGGACTAG CTTAAACCTG GAGTCAGCAG
  ATTCTAACTG CTGTCAGAAG AATGGGCCCA AGGAGTCAGG AAAGAAGCCC TTCAGGGAGG
  ATTGCTGTGA AGTGGGTGAT                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
ss45003544	mCV24451892	ABI	CRAMUS_MOUSE	f	SNP	C	G						G
ss50694206	NES13603162	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	T	G	G		T
ss146182934	ENSMUSSNP3487196	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G						G
ss325752845	CHEV_19_21672850	CHEVERUD	SCREENING_POP	f	SNP										C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
rs31175081					SNP	C	G	G	G	G	G	T	G	G	C	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50694206	NES13603162	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21575724 () rs orientation: forward

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	within coordinates
Gm59243	predicted gene, 59243	within coordinates
Rr356955	regulatory region 356955	677 bp proximal
Rr364167	regulatory region 364167	within coordinates