rs31176292 SNP Detail

Summary

• ID
  rs31176292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:37527291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG TTGCAAGTGA TCAGGACACC
  Y
  TCCTGGGGAA ACACCCGTGT GTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45003754	mCV24511786	ABI	CRAMUS_MOUSE	f	SNP	T	C				T		C
ss50794265	NES13548007	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T		T	C	C	C		T	C	T		C
ss146352497	ENSMUSSNP741293	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C						C
ss325799095	CHEV_19_37613333	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31176292					SNP	T	C	C	C	T	T	T	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50794265	NES13548007	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:37527291 () rs orientation: forward

Symbol	Name	Function Class
Exoc6	exocyst complex component 6	within coordinates
Gm59222	predicted gene, 59222	within coordinates
Rr364833	regulatory region 364833	891 bp distal
Rr364834	regulatory region 364834	511 bp proximal
Tssr156228	transcription start site region 156228	1845 bp downstream