rs31178542 SNP Detail

Summary

• ID
  rs31178542
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45158556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATAGCTG CTTAACGACC
  CATAGTGCTC AACGTCTCTA CTTTTCCCAT GTCTCAAACA GCCTGGTTTT CTCTTCCATC
  TCCCTCCTGG AACCTGCAAA AACTTACAAC TTGTCTGCTC TATTATTTTC CTCTGATACA
  ATGGTTTTCA GGCTTCAAGA TTTCACAGAG TTGAGTACTA ACGCCTGGCA GGAGGCCTCG
  M
  TACACAGGAG CTGGGAACAA CCTGTCTCAG GAGGTAACAA CAGCTTGTAT TGCTAGGGAG
  AGCTACAGGA AGAACCAGGC CATAAATCAG GGACCTGGAG TTTGAAAGTT TGGACTCTCT
  GGGAGCAAAG ATTTCACAGA GCTCAATAAT ACTGGCATGA GTAAACCAGC AGTTCCCGTG
  TCCTTTTCCC ACTTAAACTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46004649	mCV22698105	ABI	CRAMUS_MOUSE	f	SNP		A	C					C
ss61003341	NES16128352	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C	C	A	C	A	A	C
ss149136058	ENSMUSSNP2186278	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31178542					SNP	C	A	C	C	C	C	C	C	C	C	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003341	NES16128352	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45158556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19064	CpG island 19064	538 bp proximal
Nucb1	nucleobindin 1	within coordinates
Rr400313	regulatory region 400313	1149 bp upstream
Rr646471	regulatory region 646471	1174 bp distal
Rr646472	regulatory region 646472	within coordinates
Rr646473	regulatory region 646473	1184 bp proximal
Rr646474	regulatory region 646474	1907 bp proximal
Tssr72423	transcription start site region 72423	1219 bp downstream
Tssr72424	transcription start site region 72424	1234 bp downstream
Tssr72425	transcription start site region 72425	1268 bp downstream
Tulp2	TUB like protein 2	within coordinates