rs31179179 SNP Detail

Summary

• ID
  rs31179179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152685719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC CAGTGAAAAA ACACATCCAC
  R
  TCCTGACAGG AGGAGAGGAA GGTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
ss49711696	NES13078896	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
rs31179179					SNP	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711696	NES13078896	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152685719 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Rr13099	regulatory region 13099	within coordinates
Rr28716	regulatory region 28716	718 bp distal
Tssr9430	transcription start site region 9430	139 bp upstream
Tssr9431	transcription start site region 9431	1448 bp upstream
Tssr9432	transcription start site region 9432	1643 bp upstream
Tssr14234	transcription start site region 14234	1655 bp upstream
Tssr14235	transcription start site region 14235	39 bp upstream
Tssr14236	transcription start site region 14236	641 bp downstream