rs31179180 SNP Detail

Summary

• ID
  rs31179180
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152685706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA TCCTCTGACC AGCCAGTGAA
  M
  AAACACATCC ACATCCTGAC AGGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
ss49711697	NES13078895	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
rs31179180					SNP	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711697	NES13078895	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152685706 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Rr13099	regulatory region 13099	within coordinates
Rr28716	regulatory region 28716	705 bp distal
Tssr9429	transcription start site region 9429	1996 bp downstream
Tssr9430	transcription start site region 9430	152 bp upstream
Tssr9431	transcription start site region 9431	1461 bp upstream
Tssr9432	transcription start site region 9432	1656 bp upstream
Tssr14234	transcription start site region 14234	1642 bp upstream
Tssr14235	transcription start site region 14235	26 bp upstream
Tssr14236	transcription start site region 14236	654 bp downstream