rs31179181 SNP Detail

Summary

• ID
  rs31179181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152684385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC TTTAAGAATT CTGAGGCTAG
  Y
  TGAGGAAACT CACACTGTAA TTAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
ss49711698	NES13078941	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C		T
ss320068359	CHEV_1_154655764	CHEVERUD	SCREENING_POP	f	SNP							T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
rs31179181					SNP	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711698	NES13078941	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152684385 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Rr13099	regulatory region 13099	1216 bp proximal
Rr28716	regulatory region 28716	within coordinates
Tssr9423	transcription start site region 9423	844 bp downstream
Tssr9424	transcription start site region 9424	808 bp downstream
Tssr9425	transcription start site region 9425	758 bp downstream
Tssr9426	transcription start site region 9426	736 bp downstream
Tssr9427	transcription start site region 9427	718 bp downstream
Tssr9428	transcription start site region 9428	700 bp downstream
Tssr9429	transcription start site region 9429	675 bp downstream
Tssr9430	transcription start site region 9430	1473 bp upstream
Tssr14234	transcription start site region 14234	321 bp upstream
Tssr14235	transcription start site region 14235	1290 bp downstream
Tssr14236	transcription start site region 14236	1975 bp downstream