rs31179183 SNP Detail

Summary

• ID
  rs31179183
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152684303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCCTTATT ACCCAAGATC ATCTTTTAAC
  CCTTTGTGAA GACTTCTTCA TTTGTGTTTT CTTTTACCTC GCCTCCTGGA TAAAGTTTCT
  CTGCACCATA AACCCTTGTA TCCAGTTGTA AAATGCCTAT TATGGCTTCC AGGAACTTAC
  R
  CAACATCCTA TCAGTTTGGC CTGCTCAAAG AACAAGTCTG ATCAACAAGG CAGGGTTCTT
  CTTTAAGAAT TCTGAGGCTA GTTGAGGAAA CTCACACTGT AATTAAGTCA TGAAGTTCAC
  CAAGGGTATG GGATAGGGCA TTTCAGCATC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49711700	NES13078937	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G	G	A		A	G	A	A
ss320068356	CHEV_1_154655682	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31179183					SNP	G	G	A	G	A	G	G	G	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711700	NES13078937	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152684303 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Rr13099	regulatory region 13099	1298 bp proximal
Rr28716	regulatory region 28716	within coordinates
Tssr9423	transcription start site region 9423	762 bp downstream
Tssr9424	transcription start site region 9424	726 bp downstream
Tssr9425	transcription start site region 9425	676 bp downstream
Tssr9426	transcription start site region 9426	654 bp downstream
Tssr9427	transcription start site region 9427	636 bp downstream
Tssr9428	transcription start site region 9428	618 bp downstream
Tssr9429	transcription start site region 9429	593 bp downstream
Tssr9430	transcription start site region 9430	1555 bp upstream
Tssr14234	transcription start site region 14234	239 bp upstream
Tssr14235	transcription start site region 14235	1372 bp downstream