rs31179545 SNP Detail

Summary

• ID
  rs31179545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58778501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA CCTACTTAAC ACCAGGACCA
  R
  TGTGACCATT GTAGTCCCCA ATAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45004301	mCV25117211	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				A		G
ss50903133	NES13490971	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A		G	G	G	G		G	G	G		G
ss146567778	ENSMUSSNP4651739	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss325872825	CHEV_19_58864559	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31179545					SNP	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50903133	NES13490971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58778501 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	126 bp upstream
Gm56672	predicted gene, 56672	1262 bp upstream
Spmip5	sperm microtubule inner protein 5	within coordinates