rs31179548 SNP Detail

Summary

• ID
  rs31179548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153863180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGTTTGT GTCTGATTTC
  CTAGTCTTTT TCTTTCTATG TACGCCAGGT TGGCCTTCAC AGATCCTCCT GCCTCTGCTT
  TGCAGAGTGC TGGGAATTAA AGGCGTGCAC CACCATTCCT GGCTTGCCTT CCATTTCTTA
  ACTGCTGGAA TCACACACCC AGTTTTACAT GGAACCAGGG CTTTGAGTGT GCTAGGCAAA
  Y
  AGTCTTCCAA CTGAATTACA TCCCCAGCCT GATTAAGCTT CTTTCTTTTC TTCTTTTTTT
  TTTTTTAAAA AAAGGAAATT ACTTACTTTT ATTTTATGTG CATTGGTGTT ATGATTGCAT
  ATTTATCTGT GTGAACATGC GATATCTGCT GGACCTGGAG TTATAGACAG TTGTGAGCGG
  CCATGTTGTG AGCTGGCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45004304	mCV23068575	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31179548					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153863180 () rs orientation: forward

Symbol	Name	Function Class
Rr420777	regulatory region 420777	490 bp distal
Rr420778	regulatory region 420778	915 bp proximal