rs31180145 SNP Detail

Summary

• ID
  rs31180145
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152684220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCTGGCCT GGCAGGCAGT TTTAAAAGCT
  CCCAGGGCAG GTTTTCAGAG CCACCCATGG GTGGGGCTCT GCTCTTTATG AGATCTCCTT
  ATTACCCAAG ATCATCTTTT AACCCTTTGT GAAGACTTCT TCATTTGTGT TTTCTTTTAC
  M
  TCGCCTCCTG GATAAAGTTT CTCTGCACCA TAAACCCTTG TATCCAGTTG TAAAATGCCT
  ATTATGGCTT CCAGGAACTT ACGCAACATC CTATCAGTTT GGCCTGCTCA AAGAACAAGT
  CTGATCAACA AGGCAGGGTT CTTCTTTAAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss49711702	NES13078934	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	A	C	C	C	A		A	C	A
ss320068355	CHEV_1_154655599	CHEVERUD	SCREENING_POP	f	SNP										C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs31180145					SNP	C	C	A	C	A	C	C	C	A	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711702	NES13078934	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152684220 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Rr13099	regulatory region 13099	1381 bp proximal
Rr28716	regulatory region 28716	within coordinates
Tssr9423	transcription start site region 9423	679 bp downstream
Tssr9424	transcription start site region 9424	643 bp downstream
Tssr9425	transcription start site region 9425	593 bp downstream
Tssr9426	transcription start site region 9426	571 bp downstream
Tssr9427	transcription start site region 9427	553 bp downstream
Tssr9428	transcription start site region 9428	535 bp downstream
Tssr9429	transcription start site region 9429	510 bp downstream
Tssr9430	transcription start site region 9430	1638 bp upstream
Tssr14234	transcription start site region 14234	156 bp upstream
Tssr14235	transcription start site region 14235	1455 bp downstream