rs31180149 SNP Detail

Summary

• ID
  rs31180149
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152683851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACCATCCT GCCTTCTGGT AAGCACCTAA CCATGTCCCT
  GGCTGAGGCC ATCAGACTCT GGAATGAAGG GGTGCTCGCA GCCGACAAGA AGGACTGGAA
  K
  GGTGCCCTGG AGGCCTTCAG CGAGGTGCAG GACCCCCACT CGAGGATTTG CTTCAACATA
  GGCTGCGTGA ACACTATCCT GGAAAACTTG CAGGCAGCCG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49711706	NES13078925	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	G	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31180149					SNP	G	G	T	G	T	G	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711706	NES13078925	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152683851 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Rr13099	regulatory region 13099	1750 bp proximal
Rr28716	regulatory region 28716	within coordinates
Tssr9423	transcription start site region 9423	310 bp downstream
Tssr9424	transcription start site region 9424	274 bp downstream
Tssr9425	transcription start site region 9425	224 bp downstream
Tssr9426	transcription start site region 9426	202 bp downstream
Tssr9427	transcription start site region 9427	184 bp downstream
Tssr9428	transcription start site region 9428	166 bp downstream
Tssr9429	transcription start site region 9429	141 bp downstream
Tssr14234	transcription start site region 14234	210 bp downstream
Tssr14235	transcription start site region 14235	1824 bp downstream