rs31180176 SNP Detail

Summary

• ID
  rs31180176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75237151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGA GATGCAACAG TGGAAAGAAG
  R
  GCACTCTTCA TCTTGGATGA GCTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46004663	mCV23923079	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		A
ss50415649	NES13934691	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	A		A		A		G	A		G
ss145080913	ENSMUSSNP2004071	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss322267519	CHEV_7_82732289	CHEVERUD	SCREENING_POP	f	SNP												G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31180176					SNP	A	A	G	G	G	G	A	G	A	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50415649	NES13934691	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75237151 () rs orientation: forward

Symbol	Name	Function Class
Akap13	A kinase anchor protein 13	within coordinates
Rr400375	regulatory region 400375	574 bp upstream
Rr649259	regulatory region 649259	1688 bp distal
Rr649260	regulatory region 649260	within coordinates
Rr649261	regulatory region 649261	1843 bp proximal
Tssr67241	transcription start site region 67241	1689 bp downstream
Tssr67242	transcription start site region 67242	1215 bp downstream
Tssr67243	transcription start site region 67243	1183 bp downstream
Tssr67244	transcription start site region 67244	1168 bp downstream
Tssr67245	transcription start site region 67245	1131 bp downstream
Tssr67246	transcription start site region 67246	1099 bp downstream
Tssr67247	transcription start site region 67247	1070 bp downstream
Tssr67248	transcription start site region 67248	1027 bp downstream
Tssr67249	transcription start site region 67249	991 bp downstream
Tssr67250	transcription start site region 67250	955 bp downstream
Tssr73048	transcription start site region 73048	485 bp downstream