rs31180462 SNP Detail

Summary

• ID
  rs31180462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86236110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTCATTTG CCCAAGGCTG GGCTGGCAGG CCACAGTAAC
  TCAGCAGAAG GCCAAGGAGC CCCTCAGGGG CATGCTGTCA CACTTTCCAT CCCCCTGCAC
  Y
  AGCCCTGACT GAGCCTTGTA CCTGCTGCTC AAAGGACTAG GGGTATCCCC CCCCCCCCAG
  GTAGACTGGA ATGTGGGGAG GAGCCACTAT GGGGTGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45004320	mCV22889706	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31180462					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86236110 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	1083 bp downstream
Rr366828	regulatory region 366828	within coordinates
Rr414520	regulatory region 414520	348 bp distal
Rr414521	regulatory region 414521	1718 bp proximal
Tssr7739	transcription start site region 7739	1586 bp downstream
Tssr7740	transcription start site region 7740	167 bp upstream
Tssr12766	transcription start site region 12766	6 bp downstream