rs31181256 SNP Detail

Summary

• ID
  rs31181256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:110342351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTGACAG TTTTGCTTTA
  TAGTGCAAGA TGTCCTGAAA CTTGGTATTC AGCACAAACT GGTCTCAAAC TCTCAATCCC
  CCCACCACGC ACCCCCCCCT TAAGTGTTGA ATGTTGAATG AAGAGGAAAG CCTTTTGAAT
  GTTGGCTTTC CAGGTATACA AATAGTTGCT ATTATACAAG ATTCTAAAGA GAAAAAAACT
  Y
  TTACAGTGAC TTTCTTTGTT ATCTTTGCCT CCAGATTTCC TAAAACAGAA GCTAGGAGAG
  AAATTACCTC TTTATTGTTT TTTTTACAAA ATCGAGTACC ATAATCTTGC AATTTTAGCA
  AAAAGAAAAA AAAACAAGAA ATTATTATAT CATCATGTCT CCCTAATGTC TAGGTAATTA
  ATTCTAAGAT CTATGATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47525926	NES11167809	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31181256					SNP	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47525926	NES11167809	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110342351 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm64800	predicted gene, 64800			1591 bp upstream
Pkd1l3	polycystic kidney disease 1 like 3			Intron
				Noncoding-Transcript-Variant
Rr669717	regulatory region 669717			1192 bp distal
Rr669718	regulatory region 669718			687 bp distal
Tssr79361	transcription start site region 79361			1480 bp downstream
Tssr79362	transcription start site region 79362			1298 bp downstream