rs31182198 SNP Detail

Summary

• ID
  rs31182198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152627021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTACCAAA CACAGGCAAA
  AACGATGGGG GCAGGGGAGG GGGCAGTAGT AACACAAGTA GCCCGGGACA CAAGCCAGAA
  CCCACTTGAC TTGTGAGCCA GTGCAGGCTG CTGAGGTAGC CCTGAGACAC CTGGATAGGT
  GACTGACAAT AGAAATAATC GACTTAAGAC TAAGCAATAA CAAATTCATA CAATAAACCC
  Y
  GAGTTCTATA AAAGCTTAAA GGGAGTGGCG CTCTCTCCCT CAGAGCATGC TGGCGAAAGG
  ACAGCCCAGG AAGACTAGAA AAAGAGAAAG CTCCAGTAGA GAACCTCAGA TAGTTGTCAC
  AGAAAAGACA TTAAGAAAAA TGGGACTCCA GGGCACCCTC ATTTATACCA AGGCCATTGG
  TCATAAAGAT CACCTTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49711998	NES13062281	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31182198					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49711998	NES13062281	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152627021 () rs orientation: forward

Symbol	Name	Function Class
Apobec4	apolipoprotein B mRNA editing enzyme catalytic polypeptide-like 4	within coordinates
Gm28792	predicted gene 28792	within coordinates
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	within coordinates
Rr31152	regulatory region 31152	within coordinates
Tssr9415	transcription start site region 9415	744 bp downstream
Tssr9416	transcription start site region 9416	717 bp downstream
Tssr9417	transcription start site region 9417	706 bp downstream