rs31182288 SNP Detail

Summary

• ID
  rs31182288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:110339749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAGGATT GTATCCAGGA
  TGTATAAAGG GACTCCCAAA AAAAGTTATT AGGAGAATAA GTAATGCAGT CAATAAATGG
  CAAATGATCT GAGCTGACAC TTCTCAGACA GCTGGTAAAT ATGGGGAGGG GAGATGCTAC
  ACACCCTGTG TTAGACTGAG TTGCCACAGA AATAAAAAAA TAAACTGGCC TTCCCTGGGA
  R
  CACTTTGTCC TTTTCTCAGC ACAATGAAAG GTGATGGTCT CTCCGCAGGA ACAAGGACCA
  TGTACATGTG GAGTTGGGGT CTTGGGGGCA GAAGAGCCCA GTCCATCTGC AGGTCATTTC
  CCCTGTAGTC AGGAAGTGGT AGCTCCCAGC GGGTTTGTGT GGATCTCCTG ATTAGGAGCT
  TCCATAGATG TCATCTGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47525890	NES11167984	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31182288					SNP	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47525890	NES11167984	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110339749 () rs orientation: forward

Symbol	Name	Function Class
Gm64800	predicted gene, 64800	within coordinates
Pkd1l3	polycystic kidney disease 1 like 3	1079 bp upstream
Rr669717	regulatory region 669717	1303 bp proximal
Rr669718	regulatory region 669718	1894 bp proximal
Tssr79361	transcription start site region 79361	1111 bp upstream
Tssr79362	transcription start site region 79362	1300 bp upstream