rs31182811 SNP Detail

Summary

• ID
  rs31182811
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125220353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAATACA TTGATTTTAT
  TACCAAAATG GATTTCTTTC TGACTTATTA AAAATGCAAG AGCACACTGT GGAACACATG
  TCTCTCTGAC GACATGGGTA GCTTTATAGG TGTCACAACC CCTGGCTCTG CTTAATAGGA
  AGTGAATTTA CATTCCTGAA ATCTTGCAAT ATGAGAAACA ATGAGCAGAG TGAAAAGTAC
  W
  TTAGAAAAAA TGATATCTAT AAAATACCAT AACTAGATAG TTTATGATTG AAGAAGAAAG
  AACCATTAAC ATGTCATTGT ATGTATGATA GACTAGATAT TGGGAATGAA AATGGGTAAG
  CAAGCATGCA TGGACTGTAG TTCTTCCCCT GGGAGATCCA CAACAATGAC CTTGTGAGAC
  ATTATAGTGA GGTTCGGGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45506232	mCV22728851	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss320936345	CHEV_3_125129622	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31182811					SNP	T	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125220353 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	506 bp distal