rs31183212 SNP Detail

Summary

• ID
  rs31183212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:110341009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCGGTGAG AAATAGCTTC CCTAAACAAA ACAAAACCTT
  TATCTCCTTG GCAGGTTGTT CCCAACCCAC AAAAGAACAA TACGGACGAT TCTGACAAAC
  Y
  CACTGAGTCC TATTTAAAAG CCCAGGCAGC TGCCAAGCCT CCGTACATCT TCTCTCTTCT
  CACTCGAGCC TCCGTACATC TCTCTTCTCA CTCGAGCCTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss47525905	NES11167954	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs31183212					SNP	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47525905	NES11167954	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110341009 () rs orientation: forward

Symbol	Name	Function Class
Gm64800	predicted gene, 64800	249 bp upstream
Pkd1l3	polycystic kidney disease 1 like 3	mRNA-UTR
Rr669717	regulatory region 669717	43 bp proximal
Rr669718	regulatory region 669718	634 bp proximal
Tssr79361	transcription start site region 79361	138 bp downstream
Tssr79362	transcription start site region 79362	40 bp upstream