rs31183748 SNP Detail

Summary

• ID
  rs31183748
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9467963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTCCAAA CAAGTGCCCA
  ACTGTGGATC AGTATAGTTG AAATTGCACA TAGAAATCCT ATGGAAAAAT TGTATTTTTT
  ACATTAAACT CTTTGGTTTA GCTTTTATAG CCTTGATTTG AGAAATCCTT TTGGTTTCCC
  AAAGATTCAT GCATTTTATC ACTTAGAACG TTTTGGAGCC TGGACTTGAT TCAGTCAAAC
  W
  CTCTTTGAGT CTTTGGCTGG TTTCCACAGT GGGCTATTAC CATTTCCTGC TGCAGGAAGG
  CAGTGCCTTA TGCTGGAACT AGATCACAGA AAACCTGCAA TAGCCACTTC CTCCAGGCAC
  TCGTGTGTCA GCAAAAGCTG AGTCCCCAGC AACCGCCTCC GAGCCTTCCC CTTTGTTTCC
  CTCAGTGATG CTAGGGTCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45505969	mCV23607423	ABI	CRAMUS_MOUSE	f	SNP	T	A				T		T
ss60369238	NES15871118	PERLEGEN	MM_PANEL2	f	SNP			T	T	A		T	T	T	T		T	T	T		A
ss134574467	ENSMUSSNP6855344	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A						T
ss320650897	CHEV_3_9402903	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31183748					SNP	T	A	T	T	A	T	T	T	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369238	NES15871118	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9467963 () rs orientation: forward

Symbol	Name	Function Class
C030034L19Rik	RIKEN cDNA C030034L19 gene	117 bp upstream
Gm55345	predicted gene, 55345	418 bp downstream
Tssr28343	transcription start site region 28343	91 bp upstream
Tssr28344	transcription start site region 28344	146 bp upstream
Tssr28345	transcription start site region 28345	208 bp upstream