rs31183775 SNP Detail

Summary

• ID
  rs31183775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:110341044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGTAGAC ACAGATGGAG
  ACATTGGTGC CCCCGACTGT AAAGCCCCGT TTGCTATTCA TTTGCAGCCG GTGAGAAATA
  GCTTCCCTAA ACAAAACAAA ACCTTTATCT CCTTGGCAGG TTGTTCCCAA CCCACAAAAG
  AACAATACGG ACGATTCTGA CAAACTCACT GAGTCCTATT TAAAAGCCCA GGCAGCTGCC
  R
  AGCCTCCGTA CATCTTCTCT CTTCTCACTC GAGCCTCCGT ACATCTCTCT TCTCACTCGA
  GCCTCCGTAC ATCTTCTCTC TTCTCACTCG GCACAGAGAG AAAAATGCTC TTGCAGAGGC
  GGTCCTGGCT CTGGCTGTAC ATTAGAATCG GTGTCATTCT GGGTGATATT TTGGGACGTA
  AACCAAGCAT CCGGGAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47525908	NES11167956	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31183775					SNP	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47525908	NES11167956	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110341044 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm64800	predicted gene, 64800			284 bp upstream
Pkd1l3	polycystic kidney disease 1 like 3			mRNA-UTR
				Noncoding-Transcript-Variant
Rr669717	regulatory region 669717			8 bp proximal
Rr669718	regulatory region 669718			599 bp proximal
Tssr79361	transcription start site region 79361			173 bp downstream
Tssr79362	transcription start site region 79362			5 bp upstream