rs31183778 SNP Detail

Summary

• ID
  rs31183778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:110341157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCTCTCT TCTCACTCGA GCCTCCGTAC ATCTCTCTTC
  TCACTCGAGC CTCCGTACAT CTTCTCTCTT CTCACTCGGC ACAGAGAGAA AAATGCTCTT
  R
  CAGAGGCGGT CCTGGCTCTG GCTGTACATT AGAATCGGTG TCATTCTGGG TGATATTTTG
  GGACGTAAAC CAAGCATCCG GGAGCAACAT GGGGGAAACA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47525911	NES11167958	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31183778					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47525911	NES11167958	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110341157 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm64800	predicted gene, 64800			397 bp upstream
Pkd1l3	polycystic kidney disease 1 like 3			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr669717	regulatory region 669717			within coordinates
Rr669718	regulatory region 669718			486 bp proximal
Tssr79361	transcription start site region 79361			286 bp downstream
Tssr79362	transcription start site region 79362			104 bp downstream