rs31184462 SNP Detail

Summary

• ID
  rs31184462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190793825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT TTCCACTTGC CTTAAGGGAT
  Y
  CTGCCTTTTT CCTTTGTTTG TTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45005198	mCV23580497	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss146501346	ENSMUSSNP1300128	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320194658	CHEV_1_192885507	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31184462					SNP	C	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190793825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1216	CpG island 1216	971 bp proximal
Nsl1	NSL1, MIS12 kinetochore complex component	885 bp upstream
Rr29190	regulatory region 29190	375 bp proximal
Rr396711	regulatory region 396711	1244 bp upstream
Tatdn3	TatD DNase domain containing 3	within coordinates
Tssr10722	transcription start site region 10722	1373 bp upstream
Tssr15751	transcription start site region 15751	1248 bp downstream
Tssr15752	transcription start site region 15752	1268 bp downstream