rs31184524 SNP Detail

Summary

• ID
  rs31184524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:110341433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCGGGAGC AACATGGGGG
  AAACAGCTGC TATCAGCTTA ACAGACTTTT CTGTGACTTC CAGGAAGCAG ATAACTACTG
  CCACGCCCAG AGAGGACGCC TAGCCCACAC GTGGAACCCC AAGCTTCGGG GTTTCCTAAA
  AAGCTTCCTG AATGAAGAAA CAGTGTGGTG GGTCAGGGGA AACCTGACGC TGCCCGGATC
  R
  CATCCAGGGA TAAATCAGAC AGGTAGGGCT CTCGTGTTGA ATGTTGAGGG GAAAAGCTTT
  CTTGGGCTGT GTTCTAGGGT GGAAGAAAGT CATCTTTGGC CTTTCCACTT TTTTTTTTTT
  TTTTTCAGAT TACATTTTAA GGTATTGTTT TTTCCCTTTT TGAGATTTAT TTATTTTACG
  TATGAGTGCT TTATCTGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47525917	NES11167962	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31184524					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47525917	NES11167962	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110341433 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm64800	predicted gene, 64800			673 bp upstream
Pkd1l3	polycystic kidney disease 1 like 3			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr669717	regulatory region 669717			274 bp distal
Rr669718	regulatory region 669718			210 bp proximal
Tssr79361	transcription start site region 79361			562 bp downstream
Tssr79362	transcription start site region 79362			380 bp downstream