rs31184526 SNP Detail

Summary

• ID
  rs31184526
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:110341466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTTAACA GACTTTTCTG
  TGACTTCCAG GAAGCAGATA ACTACTGCCA CGCCCAGAGA GGACGCCTAG CCCACACGTG
  GAACCCCAAG CTTCGGGGTT TCCTAAAAAG CTTCCTGAAT GAAGAAACAG TGTGGTGGGT
  CAGGGGAAAC CTGACGCTGC CCGGATCGCA TCCAGGGATA AATCAGACAG GTAGGGCTCT
  M
  GTGTTGAATG TTGAGGGGAA AAGCTTTCTT GGGCTGTGTT CTAGGGTGGA AGAAAGTCAT
  CTTTGGCCTT TCCACTTTTT TTTTTTTTTT TTCAGATTAC ATTTTAAGGT ATTGTTTTTT
  CCCTTTTTGA GATTTATTTA TTTTACGTAT GAGTGCTTTA TCTGCACATC TACCTGCTTG
  CCAGAAGAGG GCATCAGATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47525920	NES11167964	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31184526					SNP	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47525920	NES11167964	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110341466 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm64800	predicted gene, 64800			706 bp upstream
Pkd1l3	polycystic kidney disease 1 like 3			Intron
				Noncoding-Transcript-Variant
Rr669717	regulatory region 669717			307 bp distal
Rr669718	regulatory region 669718			177 bp proximal
Tssr79361	transcription start site region 79361			595 bp downstream
Tssr79362	transcription start site region 79362			413 bp downstream