rs31184529 SNP Detail

Summary

• ID
  rs31184529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:110342094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGACAGG GTCTGTCTGT
  GTAGCCTTGG CTGTCCTGGA ATGTGCTCTG TAGATCACGT TCCAGGCCTT GAACTCACAG
  AGATCCTCCT GCCTGTGCCT CCTGAGTGCT GGGATTAAAG GTGTGCACCA TCATTGACCG
  GTGGCAATGA GCTTTTTGTC AGAGCCTGTC TAAAACTTAA TTCCTGAGTC TTCATGTATG
  R
  TGTTATTTTG CTTTATTTGA TTTGGGGTAT CTGGAATTTT TGTTGTTTTG TTTTATATTG
  TGACAGTTTT GCTTTATAGT GCAAGATGTC CTGAAACTTG GTATTCAGCA CAAACTGGTC
  TCAAACTCTC AATCCCCCCA CCACGCACCC CCCCCTTAAG TGTTGAATGT TGAATGAAGA
  GGAAAGCCTT TTGAATGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47525923	NES11167807	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31184529					SNP	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47525923	NES11167807	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110342094 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm64800	predicted gene, 64800			1334 bp upstream
Pkd1l3	polycystic kidney disease 1 like 3			Intron
				Noncoding-Transcript-Variant
Rr669717	regulatory region 669717			935 bp distal
Rr669718	regulatory region 669718			430 bp distal
Tssr79361	transcription start site region 79361			1223 bp downstream
Tssr79362	transcription start site region 79362			1041 bp downstream