rs31185576 SNP Detail

Summary

• ID
  rs31185576
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188116643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAGTTTAA ACAATGTAAA TTAAACCAAA AACAAAATAA
  AGGGATTTGA ATAGCAAATG TCTCCATTTG TACATAAATG ATATTACTTA CAAAAAAATT
  W
  AAAAAAATAT TAAATGTGCA TACATATGCT AAAGAAGAAA GCTAGCTCTC TACCTCACCC
  TATACAGCTA AACATGCATC TACACATTAT ATATCAAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45004376	mCV22305177	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss146473663	ENSMUSSNP6291698	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
ss320187875	CHEV_1_190208325	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31185576					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188116643 () rs orientation: forward

Symbol	Name	Function Class
Rr425688	regulatory region 425688	324 bp proximal
Rr425689	regulatory region 425689	363 bp proximal
Rr425690	regulatory region 425690	444 bp proximal
Rr425691	regulatory region 425691	708 bp proximal
Rr425692	regulatory region 425692	855 bp proximal
Rr425693	regulatory region 425693	947 bp proximal
Rr425694	regulatory region 425694	1333 bp proximal
Tssr10682	transcription start site region 10682	1334 bp downstream
Ush2a	usherin	Intron