rs31185850 SNP Detail

Summary

• ID
  rs31185850
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99507510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGGCAACTG TCTCTTGCAA GTTGCTGTGC AAGGGGCAAG ATGGTCAATC CAGGAGCAGC
  GTTCCTCCCC TGACTCTTTC CTTTAAGCCC TTATGGACAA GGACGTGAAA TTCTTTAGAA
  ATTGTGTAGG CAGAGTGGAA AGCAGTCAGC TGGTACAGAC AGAAAAGGCC ACGCAGGGGA
  AGAGAAAGGC AGGGAACCCA AGAGGGACAA AGAATCTTAA GGCTTCCTAT CATACCAGCA
  AGGGAAGTCA ACATACGAAT ATTTCATTAT TTGACATATC ATGAAAAAAT TAAAAGAAAC
  M
  AAAAAAAAAA AACCCTTAAA AACTTTAAAG GCCAAGGAAC TCTTTGGGCT CTGTAGCAAC
  ACGCGAGGAT GATGGTGGAA GGGTTTGGGG AATACTGACT TCGAGGAGAT TCTTTCAATT
  TCTTTAGAAG TTCCATTTTC CACGTTGATG TTATGGGCAT TTTCAAGAGT GGCCCTCCTA
  GCACAATAGA AACGTGATCA TTATGGTGAA ATATTGCCAT AATTACGAGA AGCTGCGGTG
  GCGGTTAGGG ACCAGCAGCA CTTGCTTAAA GAGACGACTA AAGGGAAGGA TTGTTTTCCA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46005254	mCV24185498	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31185850					SNP	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99507510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	205 bp proximal
Rr400465	regulatory region 400465	525 bp upstream
Rr652012	regulatory region 652012	586 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	756 bp upstream
Tssr68078	transcription start site region 68078	820 bp upstream
Tssr73711	transcription start site region 73711	within coordinates
Tssr73712	transcription start site region 73712	569 bp downstream
Tssr73713	transcription start site region 73713	607 bp downstream
Tssr73714	transcription start site region 73714	689 bp downstream
Xrra1	X-ray radiation resistance associated 1	915 bp upstream