rs31185872 SNP Detail

Summary

• ID
  rs31185872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152554383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAACTGG TAGGAAGCGG
  GAGGTTCCCA AGCGACCCCT CCCCATCTTA CTCCTCCCCC AAGTCATTTA AGGCACTGTC
  TCCATCCCCT CTTCTACTCC CATGTCAGCA CGGAAAGCCC ATCTCTTCAC CCCCTCACCC
  CTGCTGAACT ATTCAAGTGG GGCCCTTTCA TACCACCCAG GCTGGTGCCA GGGTCTCCTC
  Y
  GACACAACAG CGCCCCCTGG AGAAAGGCTC ACACCTGAGT CCACAGGTGA GAGCAAGCTA
  GGTGGAGGAG GGGATTTCTC CAGAGCTAGA TCATTCCTTT TCCTCTCCAT CCCTGTCTAC
  AGTTTTGACT CCTGTAGGCT TTACACGGGC GTGACTGACT GACCTGCTTA GTCACACAGG
  ACCCCTCCCT TAGCAAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49712298	NES13064194	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	T	T	T	T	T	T
ss145734384	ENSMUSSNP4185083	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31185872					SNP	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49712298	NES13064194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152554383 () rs orientation: forward

Symbol	Name	Function Class
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	Intron
Rr420516	regulatory region 420516	within coordinates
Rr420517	regulatory region 420517	7 bp proximal