rs31185873 SNP Detail

Summary

• ID
  rs31185873
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152554343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGAAGCGG GAGGTTCCCA AGCGACCCCT
  CCCCATCTTA CTCCTCCCCC AAGTCATTTA AGGCACTGTC TCCATCCCCT CTTCTACTCC
  CATGTCAGCA CGGAAAGCCC ATCTCTTCAC CCCCTCACCC CTGCTGAACT ATTCAAGTGG
  K
  GCCCTTTCAT ACCACCCAGG CTGGTGCCAG GGTCTCCTCT GACACAACAG CGCCCCCTGG
  AGAAAGGCTC ACACCTGAGT CCACAGGTGA GAGCAAGCTA GGTGGAGGAG GGGATTTCTC
  CAGAGCTAGA TCATTCCTTT TCCTCTCCAT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49712299	NES13064193	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	G	G	G	T		T	G	T	T		G
ss320067380	CHEV_1_154525722	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31185873					SNP	G	G	T	G	T	G	G	G	G	T	G	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49712299	NES13064193	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152554343 () rs orientation: forward

Symbol	Name	Function Class
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	Intron
Rr420516	regulatory region 420516	within coordinates
Rr420517	regulatory region 420517	47 bp proximal