rs31186367 SNP Detail

Summary

• ID
  rs31186367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:119983268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAA CAAGGCTACT GAGTGCCTGC
  Y
  GTTCACTCCA GAGTGCTAAG TGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45005492	mCV22772778	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145310747	ENSMUSSNP1346439	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss319931531	CHEV_1_121952115	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31186367					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:119983268 () rs orientation: forward

Symbol	Name	Function Class
Rr30107	regulatory region 30107	within coordinates
Rr371936	regulatory region 371936	within coordinates
Sctr	secretin receptor	within coordinates
Tssr8396	transcription start site region 8396	302 bp downstream
Tssr8397	transcription start site region 8397	279 bp downstream