rs31186724 SNP Detail

Summary

• ID
  rs31186724
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152554094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGAACTC CACTTGTCCT
  GTCTTGGGGA AAGATGTATT TCTACACTGG CAACAGCCCC AAAGCACCGG CAGCTGAGGG
  GCATCTTAGA GAGGCAGCCA GCTCTTACAA GGCCCTGTGA AGTTGAAGAT TCTCCCCTCC
  TCCTCACCGG AGTCTTTCCC ACCCATCCTC ATCAGATCTA CTCACTTAGA AACATAAATG
  R
  TGCTGGGTAC TTCCACTTCA GCCACACAAT AACCTCACAA GATGTTTACC ACTATCTACT
  CTGGTGAGAA ATGAGAGTCT GAGAAGCTAA GTAACTGGTA GGAAGCGGGA GGTTCCCAAG
  CGACCCCTCC CCATCTTACT CCTCCCCCAA GTCATTTAAG GCACTGTCTC CATCCCCTCT
  TCTACTCCCA TGTCAGCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49712300	NES13064240	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31186724					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49712300	NES13064240	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152554094 () rs orientation: forward

Symbol	Name	Function Class
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	Intron
Rr420516	regulatory region 420516	within coordinates
Rr420517	regulatory region 420517	296 bp proximal