rs31186729 SNP Detail

Summary

• ID
  rs31186729
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152553890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGATGGC TTCAGCAGCA
  TTCCCTACAT GTCATGGAAA TGTCGCTGGG TGAGCTAGAC AGATTACAAG ATCTCAGAGC
  AAGCACTGTA CATTTGTAAG CACTCTGCAG CCCAGCGACC CCACAGCGAG GACTCTACTG
  TCTGCCCACA GCTGCTCTCC CGGCTCCACA GTGTGGGTGC AGGCTGGCCC ATTTTCAATG
  M
  TGGCGCTGAA CTCCACTTGT CCTGTCTTGG GGAAAGATGT ATTTCTACAC TGGCAACAGC
  CCCAAAGCAC CGGCAGCTGA GGGGCATCTT AGAGAGGCAG CCAGCTCTTA CAAGGCCCTG
  TGAAGTTGAA GATTCTCCCC TCCTCCTCAC CGGAGTCTTT CCCACCCATC CTCATCAGAT
  CTACTCACTT AGAAACATAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45150054	mCV24918162	ABI	CRAMUS_MOUSE	f	SNP		A	C						C
ss49712305	NES13064231	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C	C	C	C	C	C	C	C	C	C
ss145734370	ENSMUSSNP1358711	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31186729					SNP	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49712305	NES13064231	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152553890 () rs orientation: forward

Symbol	Name	Function Class
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	Intron
Rr420516	regulatory region 420516	within coordinates
Rr420517	regulatory region 420517	500 bp proximal