rs31186829 SNP Detail

Summary

• ID
  rs31186829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148783849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTA TAGTCTTTGC TTCAAGCTGC
  Y
  TTATATCCAT CTCAAAATCG ACAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss45506669	mCV23014081	ABI	CRAMUS_MOUSE	f	SNP		C	T					C	C
ss61098096	NES16608694	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T			T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs31186829					SNP	C	C	T	C	T	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098096	NES16608694	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148783849 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	1986 bp distal
Rr587253	regulatory region 587253	680 bp distal
Rr587254	regulatory region 587254	742 bp proximal
Tssr36091	transcription start site region 36091	1113 bp upstream
Tssr36092	transcription start site region 36092	1085 bp upstream
Tssr36093	transcription start site region 36093	1053 bp upstream
Tssr36094	transcription start site region 36094	1020 bp upstream
Tssr36095	transcription start site region 36095	947 bp upstream
Tssr36096	transcription start site region 36096	850 bp upstream