rs31189898 SNP Detail

Summary

• ID
  rs31189898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:12502997 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  CCAGACTTAC CTTGTAAAGC TATACTTACG GGTACCCTGT TCCCCAGCTG AAGAGTTCTG
  AATTCACGCA GTTGAATCCT TCTCAACAGT CTGTTTTGTG GGAACACTTC ATGACCGTGA
  CCCGCAGTTC TGGTTCCGGA ATGAGGGATC TTCCTTGCGC CGGTGATGGT TAACTCCCGT
  CCCGAGTTTT CTTGTCCCGG GTTTTTTCTT CCCGGATTTT CTCGTCCCGG ATTTCGGCAC
  CAACTCTTAC ACGCGTTCAC GCGACCGGCC AGGAAAGACG CAGCAAACCA GAATCTTCTG
  Y
  GGCAAAACTT TATTGCTTAC ATCTTCAGGA GCAAGAGTGC AAGAGAGCAA GCGCTCTATT
  GCTTACATCT TTAGGAGCCA GAGCGCAAGA GCGCAAGAGC TTTATTGCTT ACATCTTCAG
  GAGCAAGAAG CAAGAGCCAG AGCAAGAGAG AGAATGGGGA AACCCCGTCC CTTTTTAAGG
  AGAATTATTC TCCGCCTAGG ACGTATTACT CCCTGATTGG CTGCAGCCCA TCGGCCGAGT
  TGTCGTCACG GGGAAGGCAG AGCACATGGG GTGGAAAACT ACCCTTGGCA CATGCGCAGA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39263569	mCV23674777	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31189898					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:12502997 () rs orientation: reverse

Symbol	Name	Function Class
Map3k4	mitogen-activated protein kinase kinase kinase 4	within coordinates
Rr392297	regulatory region 392297	within coordinates